setVersionTool.php

<?php
 
require(dirname(dirname(dirname(dirname(__FILE__)))) . '/tools/bootstrap.inc.php');
 
class SetVersionTool extends CommandLineTool {
 
   function execute() {
      $request = Application::get()->getRequest();
      $contextIds = Services::get('context')->getIds();
      foreach ($contextIds as $contextId) {
         $submissions = Services::get('submission')->getMany(['contextId' => $contextId]);
         foreach ($submissions as $submission) {
            $version = 1;
            foreach ((array) $submission->getData('publications') as $publication) {
               Services::get('publication')->edit($publication, ['version' => $version], $request);
               $version++;
            }
         }
      }
   }
}
 
$tool = new SetVersionTool(isset($argv) ? $argv : []);
$tool->execute();