PKP Wiki - Changes related to "Main Page" [en]

XML Publishing

2013-05-21T17:02:09Z

‎DIGO (Draft In, Galley Out) OJS Plugin for XML HTML and PDF Output:

Technical Committee

2013-05-16T21:07:54Z

‎Current Members:

PKP/Dataverse Network Integration

2013-05-15T20:13:35Z

XML Publishing

2013-05-15T20:09:12Z

‎XML Publishing Document Archive:

PKP/Dataverse Network Integration

2013-05-15T18:14:48Z

Created page with "This project allows journals to facilitate research data sharing and archiving by setting up a plugin in their OJS installation for authors to be able to deposit their researc..."

New page

This project allows journals to facilitate research data sharing and archiving by setting up a plugin in their OJS installation for authors to be able to deposit their research data at the same time as their article from the journal's article submission system. (This plugin will eventually be available for OMP and OCS.) This plugin will complement and/or replace OJS' current "supplementary files" option, and will also provide access to Dataverse Network data preservation, citation and analysis tools at the journal/article level. OJS Journal integration with the Dataverse Network will be available for any OJS journal that wishes to implement easy data sharing and archiving, and enhance their published articles with links to data.

==== What is the Dataverse Network? ====

[http://thedata.org The Dataverse Network] is an open source web application for sharing, citing, analyzing and preserving research data. Supports the sharing of open data, which enables reusable and reproducible research. Researchers, data authors, publishers, data distributors, and affiliated institutions all receive appropriate credit.

More information, including roadmaps, FAQs and other documents, can be found on the [http://projects.iq.harvard.edu/ojs-dvn/book/project-documentation Dataverse Network Project Page].

@@ Line 11: / Line 11: @@
 This project implements an OJS plugin for producing NLM standard article XML, as well as pdf and HTML document versions for any article uploaded to an OJS journal.
-This plugin will have an enabled/disabled state, and will have one settings field for selecting a csl style from a dynamic list that pertains to the OJS journal.
+This plugin will have an enabled/disabled state, and will have a few settings fields.  One field will enable selecting a CSL style (that pertains to the OJS journal) from a dynamic list.  This controls the format of citations and bibliography entries.  Another setting will control whether a pdf version of the article intended only for reviewers is produced.  As well, an upload field is provided to send a header image for inclusion in pdf and html versions.  Finally, using the OJS file manager, Journal Managers can change the styling of displayed documents.
 When an author, copyeditor or editor uploads a new version (odt, docx, doc, or pdf format) of an article, this module (using a separate thread) submits it to the pdfx server specified in the configuration file.  The following files are returned in a gzip'ed archive file (X-Y-Z-AG.tar.gz) which is added (or replaces a pre-existing version in) the Supplementary files section.
-* document.pdf (may be generated if input format is not pdf)
+* document-new.pdf (new version of original pdf or other file format)
-* document.nlm.xml (NLM National Library of Medicine standard xml)
+* document-review.pdf (included for reviewers only, it has 1st page author information stripped out)
 * document.html and related graphics
 * document.bib (a bibtex text file of reference data)
@@ Line 23: / Line 24: @@
 If the article is being uploaded as a galley publish, this plugin will extract the xml and pdf versions when they are ready, and will place them in the supplementary file folder so that web options can be provided for viewing.
-We are doing this each time an article is submitted to enable the bibliographic reference work to be available at early stages of review and during copyedit.
+This process is triggered each time an article is submitted to enable the bibliographic reference work to be available at early stages of review and during copyedit.
 == XML Publishing Document Archive ==

@@ Line 27: / Line 27: @@
 * Lisa Schiff (CDL)
 * Bartek Kawula (OCUL)
-* QinQin Lin (OCUL)
+* Qinqin Lin (OCUL)
 * Brian Gregg (UPitt)
 * Allan Bell (UBC)
@@ Line 41: / Line 41: @@
 == Meeting Agendas ==
 [[16 April 2013]]
 == Meeting Minutes ==
 [[Tech Committee Meeting Minutes 16 April 2013]]

← Older revision		Revision as of 20:09, 15 May 2013
(4 intermediate revisions by one user not shown)
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−	~~#REDIRECT~~ [[XML Publishing Roadmap]]	+	PKP is currently working on an XML publishing workflow whereby article components (submission documents, citation lists, article metadata) are transformed into NLM XML for subsequent use in the publishing process. This meta-project consists of numerous sub-projects, and is itself directly inspired by PKP's Lemon8 project.
		+
		+	Previous iterations of this project include the OJS XML Galley Plugin (a standard component of OJS), the [http://pkp.sfu.ca/ojs/docs/userguide/2.3.3/sectionEditorReferences.html Citation Markup Assistant] (also a standard component of OJS), and [http://pkp.sfu.ca/lemon8 Lemon8] (an external application, since retired). The current focus of the project is on converting OJS submission drafts into NLM XML, which can in turn be converted to HTML and PDF galleys.
		+
		+	== Project Contacts ==
		+	* [mailto:axfelix@gmail.com Alex Garnett]
		+	* [mailto:damion@learningpoint.ca Damion Dooley]
		+
		+	== DIGO (Draft In, Galley Out) OJS Plugin for XML HTML and PDF Output ==
		+
		+	This project implements an OJS plugin for producing NLM standard article XML, as well as pdf and HTML document versions for any article uploaded to an OJS journal.
		+
		+	This plugin will have an enabled/disabled state, and will have one settings field for selecting a csl style from a dynamic list that pertains to the OJS journal.
		+
		+	When an author, copyeditor or editor uploads a new version (odt, docx, doc, or pdf format) of an article, this module (using a separate thread) submits it to the pdfx server specified in the configuration file. The following files are returned in a gzip'ed archive file (X-Y-Z-AG.tar.gz) which is added (or replaces a pre-existing version in) the Supplementary files section.
		+
		+	* document.pdf (may be generated if input format is not pdf)
		+	* document.nlm.xml (NLM National Library of Medicine standard xml)
		+	* document.html and related graphics
		+	* document.bib (a bibtex text file of reference data)
		+	* document.refs (a text file of the article's citations and their bibliographic references, formatted according to selected CSL style. It provides an indication of which references were unused in body of article.)
		+
		+	If the article is being uploaded as a galley publish, this plugin will extract the xml and pdf versions when they are ready, and will place them in the supplementary file folder so that web options can be provided for viewing.
		+
		+	We are doing this each time an article is submitted to enable the bibliographic reference work to be available at early stages of review and during copyedit.
		+
		+	== XML Publishing Document Archive ==
		+
		+	The following information is provided for archival/informational purposes only.
		+
		+	: [[Lemon8-XML Community Documentation]]
		+	: [[Lemon8-XML Roadmap\|Citation Mark-Up Assistant Development Roadmap]]
		+	: [[XML Publishing Roadmap]]

@@ Line 1: / Line 1: @@
 This project allows journals to facilitate research data sharing and archiving by setting up a plugin in their OJS installation for authors to be able to deposit their research data at the same time as their article from the journal's article submission system. (This plugin will eventually be available for OMP and OCS.) This plugin will complement and/or replace OJS' current "supplementary files" option, and will also provide access to Dataverse Network data preservation, citation and analysis tools at the journal/article level. OJS Journal integration with the Dataverse Network will be available for any OJS journal that wishes to implement easy data sharing and archiving, and enhance their published articles with links to data.
 [http://thedata.org The Dataverse Network] is an open source web application for sharing, citing, analyzing and preserving research data. Supports the sharing of open data, which enables reusable and reproducible research. Researchers, data authors, publishers, data distributors, and affiliated institutions all receive appropriate credit.
 More information, including roadmaps, FAQs and other documents, can be found on the [http://projects.iq.harvard.edu/ojs-dvn/book/project-documentation Dataverse Network Project Page].