mcrider (thank you) has suggested to move the folder to a non web readable spot and change the path in config.inc.php
Since I am not an expert system administrator (just learn things recently), to avoid moving wrong folder, I just copied to the folder what I want, then changed
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I tested to create a folder from Conference manager > File browser
It created in the new folder, also uploaded papers go to the new folder. All ok now.
Thank you PKP support and developer team.